What kind of carbs do you have? Keihin, Mikuni, Lectron, etc... What is your current main jet size, current dump tube size, needle size, pilot jet size... We need more information to be able to help you get it set up right. I NEVER trust anyone else's jetting or setup. I will always start over and re-jet the bike myself. Just because the guy told you it was set up to run alky doesn't mean he knew what he was doing or had the setup right.
Tell us:
Elevation
Average Temp where you ride
Main jet size
Dump Tube Size
Needle size
Pilot size
how many turns out on the power jet are you?
compression
timing advance
pickup coil gap
plug type
plug gap
Do you have all the other supporting mods to run alky? Gas cap modded, pingle, billet bowls, etc...