I'll take a stab at this for you. I would start with a (mikuni jets) 165 in the left and a 170 in the right, minimun of 25 pilots 3/1/2 turns out on the air screws, maybe even 27.5's, clips in the 4th groove (from the blunt end). Run it for awhile and check your plug. I wouldn't be suprized if your real close with that setup. I'm real close to your setup with a stage 1 and porting, trinity stage 4 exhaust and I'm at (dynojets and needles) 160L/165R, 25P. 4th groove L/5th groove R.
I highly recommend the dynojet stage II kit with a few extra size bigger jets. It got rid of my midrange hesitation that I had when I took the airbox lid off.