Bottom line is, you really shouldn't build a Trail/Dune bike out of one Banshee.
You're better off building a Duner out of the Banshee and keeping your Raptor as a trail bike, cause in reality, that's what they really are anyway...
Aftermarket cylinders are going to run you ~$800 whether they are 4mil, 10mil, Serval or Cub.
A 4mil HotRods crank is ~$400
A 10mil Crank is double that and then some cause I don't think there is a forged 10mil crank so you have to go billet, but I'm not 100% sure about that.
Plus for a 4mil or a 10 mil stroker you'll definitely need more supporting mods, ie., larger reed cages, larger intakes, larger carbs, new pipes, new clutch and depending on 4mil or 10mil, you probably need a lock-up clutch for the 10mil, oh and a head with custom domes for the extra stroke of both the 4mil or 10mil.
Not sure what kind of a budget you have, because $$$ can get out of line, really, really fast...
My 02 is going to be my Trail Banshee with a MotoX port good for 60-65rwhp.
My 87 wil be a 4mil Dune Port stock cylinder Duner good for 75-80rwhp.