Here's a Clymers Manual.
http://www.farmandsandtoys.com/partdetail.asp?partid=172
Just like said above, the reed cages are between the cylinders and the carb intake boots.
Before you go tearing into it, you can remove the left carb and let it hang over the frame.
Shine a flashlight in thru the intake boot and look at the reed pedals.
Chances are the left cylinder reed pedal(s) are broken.
If the reed cages are stock, then you can get a set of these and be on your way cheap.
http://www.ebay.com/itm/Boyesen-Power-Reeds-YAMAHA-YFZ350-BANSHEE-1987-2006-REED-/400570100168
Since you have a 4mil stroker and these are good for some pretty decent horsepower gains over the V-Force 3's, you might want to give these a shot.
They're not as cheap as just swapping out the reed pedals on stock cages, but you'll feel the difference over stock, guaranteed...
http://www.ebay.com/itm/BRAND-NEW-V-FORCE-4-REED-VALVE-SYSTEM-BANSHEE-87-06-/121159970663?pt=Motorcycles_Parts_Accessories&hash=item1c35b26f67&vxp=mtr