+1 on the clymers manual, I have the Yamaha Service tech manual (75.00) Clymers can be had for 29.00
Both tell you all tools needed in the preface of the books.
A battery or pneumatic impact gun is very handy and to me a must. Tourque wrench up to 100 or so ftlbs. Metric impact socket set to 20mm + 32mm.Feeler gauges, make a leak down tester(before u need it) Get a flywheel puller for your bike. I recommend an atv roll around jack, worth every dime. Other than that, like I said, the book has it all listed out.
I am trying to scan and convert the yamatech manual to a pdf format so I can send it off to people as we speak, trying to gauge intrest in it right now.