i'm at 5000 ft also,,,running pods and pipes,mild porting,v 2 reeds..jetting is 250 mains and 25 pilots. the clogged pilots where proabaly most of your problem.did you check your compression?
sweet ride,,,man that is clean.looks like it was very well taken care of.
i would do some reading on here about removing the tors on your carbs thou.the system sucks and will cause you all sorts of headachs in the future.